HIBIT 2009

>> HIBIT 2009 Program

HIBIT’09 Program
April 16-17, 2009, Informatics Institute, METU, Ankara, Turkey

	DAY 1: April 16 Thursday
9:00-9:30	Registration
9:30-9:45	Opening Remarks Nazife Baykal Conference Chair Room A
9:45-10:45	Keynote Speech Mehmet Öztürk Bilkent University Session Chair: Neşe Yalabık Room A
10:45-11:00	*Coffee Break*
11:00-12:30	HI Session 1: Decision Support Systems and Computer Aided Diagnosis Session Chair: Volkan Atalay Room A	BI Session1: Machine Learning for Bioinformatics Session Chair: Gerhard Wilhelm Weber Room B
12:30-14:00	*Lunch*
14:00-15:30	HI Session 2: Clinical Informatics and Hospital Information Systems Session Chair: Nazife Baykal Room A	BI Session 2: Bioinformatics for Cancer Studies Session Chair: Rengül Çetin-Atalay Room B
15:30-15:45	*Coffee Break*
15:45-16:45	HI Lecture 1: Zeynep Arzıman TÜBİTAK Session Chair: Sevgi Özkan Room A	BI Lecture 1: Mehmet Serkan Apaydın Sabancı University Session Chair: Tolga Can Room B
16:45-18:00	*Poster Session* Session Chair: Çağdaş Son Room A (short oral presentations) and Main Hall (posters)
18:00-22:30	*Social Program Day 1* Ankara Castle visit and Conference Dinner at Zenger Paşa Konağı

	DAY 2: April 17 Friday
9:30-10:30	Keynote Speech Klaus-Peter Adlassnig Medical University of Vienna Session Chair: Nazife Baykal Room A
10:30-11:00	*Coffee Break*
11:00-12:30	HI Session 3: Data Mining and Knowledge Discovery in HI Session Chair: TBA Room A	Industry Session: INTEL, TURKCELL, BİRİM, ÇÖZÜM Session Chair: Murat Sincan Room B
12:30-14:00	*Lunch*
14:00-15:00	Keynote Speech Uğur Sezerman Sabancı University Session Chair: Mesude İşcan Room A
15:00-16:00	HI Lecture 2: Fatih Tank Kırıkkale University Session Chair: TBA Room A	BI Lecture 2: Cemalettin Bekpen University of Washington Session Chair: İnci Togan Room B
16:00-16:15	*Coffee Break*
16:15-17:45	HI Session 4: Computer Graphics/Image Processing in Health Informatics Session Chair: TBA Room A	BI Session 3: Genome-wide Bioinformatics Studies Session Chair: Özlen Konu Room B
17:45-18:00	Closing Remarks
19:00-22:30	*Social Program Day 2* CSO (Presidential Symphony Orchestra) Concert

Talks in HI and BI sessions: 30 min, 1:30 hr total

DETAILED PROGRAM:

DAY 1: Thursday (16.04.2009)

9:00-9:30 Opening Remarks

9:30-9:45 Opening Remarks

9:45-10:45 Keynote Speech by Mehmet Öztürk, Bilkent University, Ankara, Turkey
“Bioinformatics: The art of discovering in a haystack”

10:45-11:00 Coffee Break

Health Informatics Session 1: Decision Support Systems and Computer Aided Diagnosis
11:00-11:30    M. Azarpous et al. “ICA feature based arrhythmia detection using fuzzy classifier”
11:30-12:00    E. Cakir et al. “A Bayesian decision support system for pediatric diagnosis of upper respiratory infections”
12:00-12:30    U. Celik et al. “Artificial immune systems for headache diagnosis”

Bioinformatics Session 1: Machine Learning for Bioinformatics
11:00-11:30    M. Yousef et al. “One-class machine learning for microRNA target detection”
11:30-12:00    M. E. Sahin and T. Can “Predicting protein-protein interactions from protein sequences using two different classifiers with auto covariance”
12:00-12:30    O. N. Yaveroglu and T. Can “Prediction of protein-protein interactions using statistical data analysis methods”

12:30-14:00 Lunch

Health Informatics Session 2: Clinical Informatics and Hospital Information Systems
14:00-14:30    M. S. Unluturk and C. Atay “Leveraging nurse call system using RFID technology and web services”
14:30-15:00    I. Arpaci and A. Arifoglu “E-health activities in the Ministry of Health of Turkey”
15:00-15:30    S. O. Ata and S. Ozkan “Teledentistry: A new term for Turkey”

Bioinformatics Session 2: Bioinformatics for Cancer Studies
14:00-14:30    F. K. Ahmad et al. “Integrative analysis of breast cancer prognosis by merging microarray and clinical data with Bayesian networks”
14:30-15:00    A. R et al. “Selective estrogen receptor modulator effect of malvidin on estrogen dependent breast cancer”
15:00-15:30    I. Cimen et al. “An in vitro study of the tumor suppressive properties of 15-lipoxygenase-1 in colorectal cancer”

15:30-15:45 Coffee Break

Health Informatics Lecture 1
15:45-16:45 Zeynep Arzıman, TÜBİTAK
“European Union Seventh Framework projects on Health Informatics”

Bioinformatics Lecture 1
15:45-16:45 M. Serkan Apaydın, Sabancı University
“Introduction to Nuclear Magnetic Resonance spectroscopy”

16:45-18:00 Poster Session

SOCIAL PROGRAM DAY 1: (Thursday 16.04.2009)
Ankara Castle visit and Conference Dinner at Zenger Paşa Konağı
18:00 Depart from METU (Buses are available from the Conference Venue)
22:30 Return to METU
Total cost: 60 TL
Please register offhand by sending an e-mail to: yalabik@ceng.metu.edu.tr and pay at Registration Desk.

DAY 2: Friday (17.04.2009)

9:30-10:30 Keynote Speech by Klaus-Peter Adlassnig, Medical University of Vienna, Austria
“Artificial-Intelligence-Augmented Clinical Medicine”

10:30-11:00 Coffee Break

Health Informatics Session 3: Data Mining and Knowledge Discovery in Health Informatics
11:00-11:30    C. Meydan et al. “Prediction of peptides binding to MHC Class I alleles by partial periodic pattern mining”
11:30-12:00    A. Ozgur et al. “Stochastic optimization of turn of duty for pharmacies”
12:00-12:30    Y. Luo and O. Uzuner “Causal relation extraction in medical discharge summaries – a hierarchical rule-based approach”

Industry Session:
11:00-11:20    Cenk Tezcan, INTEL, “Mobile tele-health in Turkey”
11:20-11:40    Habibe Açık, TURKCELL, “Mobile tele-health in Turkey”
11:40-12:00    Barış Dinler, BİRİM, “Digital Hospitals”
12:00-12:20    Ömer Siso, ÇÖZÜM, “Hospital Information Systems and PACS”

12:30-14:00 Lunch

14:00-15:00 Keynote Speech by Uğur Sezerman, Sabancı University, İstanbul, Turkey
“Structural Bioinformatics and Its Applications in Automatic Function Identification”

Health Informatics Lecture 2
15:00-16:00 Fatih Tank, Kırıkkale University
“Health Insurance Mathematics”

Bioinformatics Lecture 2
15:00-16:00 Cemalettin Bekpen, University of Washington
“Comparative genome analysis and dynamic structure of duplicated gene families”

16:00-16:15 Coffee Break

Health Informatics Session 4: Computer Graphics/Image Processing in Health Informatics
16:15-16:45    L. Sezer and N. E. Cagiltay “Improving the functions of the arm and hand motions of rehabilitation patients by using a mixed reality game”
16:45-17:15    A. Z. Senkal “Efficiency of icon design in medical information systems”
17:15-17:45    P. Gorgel et al. “A wavelet-based mammographic image enhancement using homomorphic filtering”

Bioinformatics Session 3: Genome-wide Bioinformatics Studies

16:15-16:45    M. Malyutov et al. “Robust reweighed orthogonal for microarray normalization”
16:45-17:15    J. Allmer et al. “2DB news: security and functional enhancements”
17:15-17:45    D. Yorukoglu “Feature Selection Application on Microarray Datasets Using Swarm Intelligence Algorithms”

17:45-18:00 Closing Remarks

SOCIAL PROGRAM DAY 2: (Friday 17.04.2009)
CSO (Presidential Symphony Orchestra) Concert
19:00 Depart from METU (Busses are available from the Conference Venue)
20:00 Concert at CSO Concert Hall
22:30 Return to METU
Total cost: 15 TL
Limited number of tickets are available. Please register offhand by sending an e-mail to: yalabik@ceng.metu.edu.tr and pay at Registration Desk.

POSTER PRESENTATIONS:

B. Coskunkan et al., “A systems biology based approach to analyze type 2 diabetes protein interaction network”
D. Rende et al., “Integration of functional modules in type 2 diabetes protein interaction network with OMIMdatabase reveals associations between complex disorders”
S. O. Ata and S. Ozkan, “The use of digital radiography in dentistry”
S. O. Ata et al., “Using telemedical devices on-board”
M. V. Cakır and J. Allmer, “Systematic computational analysis of RNAi regulation in Toxoplasma gondii”
S. O. Ata and S. Ozkan, “Ethical issues of teledentistry”
N. Batur and J. Allmer, “Database management system independence by amending 2DB with a database access layer”
Y. Bakis and U. Sezerman, “Optimization of morphological data by genetic algorithms - feature selection method”
S. O. Ata and S. Ozkan, “Clinical computing technology in dental offices”
S. A. Dogan et al., “Genetic diversity in Turkish native sheep breeds based on two independently collected data”
S. C. Acan and I. Togan, “Network structure analysis of sixteen food webs”
K. Karatepe and I. Gursel, “Transcriptome analyses of immune cells treated with immunosuppressive DNA”
O. Erdas et al., “Clustering gait patterns of children with cerebral palsy”
O. Dalay et al., “Microorganismal protein function annotation and organism specific metabolic pathway construction”
Z. Sokmen et al., “Integration of CHiP-seq and microarray gene expression data”
A. D. Gulsoy et al., “Molecular diversity in non-codıng trn regions of chloroplast genome of Pinus nigra Arnold subspecies Pallasiana varieties”
A. Dizkirici et al., “Sequence diversity in the nuclear ribosomal internal transcribed spacer of Elymus and related genera (Poaceae: Triticeae) and its implication in speciation”
E. I. Oktay et al., “Identification of the mechanisms of immune responses associated with SOX2 mRNA expression in cancer by microarray metaanalysis”
A. G. Yaman et al., “Classification of enzyme functions using enzyme commission classes in a hierarchical approach”
S. B. Akkas et al., “Prediction of protein secondary structure using neural networks in biological systems”
T. Yanik et al., “Monogenic obesity”
M. Sincan and N. Baykal, “HIS-3M: A new model for evaluation of information systems in healthcare”
S. Ozogur-Akyuz et al. “Sleep stage classification using ECOC”
Y. A. Son and E. Michaud, “Differential expression of skin cancer and hair-growth cycle regulated genes in tumor susceptible K14-Agouti mice”
B. Akman and A. E. Erson, “Structural analysis of a 50 kb region on 17q23”